J4_8BIM_013

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8BIM|1|2|C|183, 8BIM|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1651

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BIM|1|2|G|142
8BIM|1|2|A|143
8BIM|1|2|G|144
*
8BIM|1|2|C|178
8BIM|1|2|A|179
8BIM|1|2|U|180
8BIM|1|2|A|181
8BIM|1|2|A|182
8BIM|1|2|C|183
8BIM|1|2|G|184
*
8BIM|1|2|C|193
8BIM|1|2|C|194
8BIM|1|2|A|195
8BIM|1|2|A|196
8BIM|1|2|A|197
8BIM|1|2|G|198
*
8BIM|1|2|U|219
8BIM|1|2|G|220
8BIM|1|2|C|221

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20