3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BN3_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.0973
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

8BN3|1|1|C|185
8BN3|1|1|U|186
8BN3|1|1|A|187
8BN3|1|1|U|188
8BN3|1|1|G|189
*
8BN3|1|1|C|205
8BN3|1|1|G|206
8BN3|1|1|U|207
8BN3|1|1|C|208
*
8BN3|1|1|G|212
8BN3|1|1|A|213
8BN3|1|1|G|214
*
8BN3|1|1|C|226
8BN3|1|1|G|227
8BN3|1|1|U|228
8BN3|1|1|G|229
8BN3|1|1|U|230
8BN3|1|1|G|231

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain L4
RPL4A isoform 1
Chain N6
Large ribosomal subunit protein uL24A

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