J4_8BN3_005
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8BN3|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BN3_005 not in the Motif Atlas
- Homologous match to J4_9AXU_005
- Geometric discrepancy: 0.0538
- The information below is about J4_9AXU_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8BN3|1|1|U|1495
8BN3|1|1|C|1496
*
8BN3|1|1|G|1520
8BN3|1|1|G|1521
8BN3|1|1|U|1522
8BN3|1|1|U|1523
8BN3|1|1|A|1524
8BN3|1|1|G|1525
*
8BN3|1|1|C|1614
8BN3|1|1|C|1615
*
8BN3|1|1|G|1829
8BN3|1|1|G|1830
8BN3|1|1|U|1831
8BN3|1|1|C|1832
8BN3|1|1|G|1833
8BN3|1|1|U|1834
8BN3|1|1|A|1835
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain M9
- 60S ribosomal protein L19-A
- Chain N5
- 60S ribosomal protein L25
- Chain O4
- Large ribosomal subunit protein eL34A
- Chain O8
- RPL38 isoform 1
- Chain O9
- 60S ribosomal protein L39
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