J4_8BN3_013

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8BN3|1|2|A|623, 8BN3|1|2|A|1026, 8BN3|1|2|C|1028, 8BN3|1|2|U|1029, 8BN3|1|2|A|1030, 8BN3|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BN3_013 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.0681

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|A|622
8BN3|1|2|A|623
8BN3|1|2|G|624
*
8BN3|1|2|C|975
8BN3|1|2|G|976
8BN3|1|2|A|977
8BN3|1|2|A|978
8BN3|1|2|A|979
8BN3|1|2|G|980
*
8BN3|1|2|C|1021
8BN3|1|2|C|1022
8BN3|1|2|A|1023
8BN3|1|2|U|1024
8BN3|1|2|A|1025
8BN3|1|2|A|1026
8BN3|1|2|A|1027
8BN3|1|2|C|1028
8BN3|1|2|U|1029
8BN3|1|2|A|1030
8BN3|1|2|U|1031
8BN3|1|2|G|1032
*
8BN3|1|2|U|1090
8BN3|1|2|U|1091

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C1

Small ribosomal subunit protein uS17A

Chain C3

40S ribosomal protein S13

Chain C4

40S ribosomal protein S14-B

Chain D2

RPS22A isoform 1

Chain D3

40S ribosomal protein S23-A

Chain D6

RPS26B isoform 1

Chain Q1

Large ribosomal subunit protein eL41B