J4_8BPO_003
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 8BPO|1|A1|A|2366, 8BPO|1|A1|U|2369, 8BPO|1|A1|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|2365
8BPO|1|A1|A|2366
8BPO|1|A1|A|2367
8BPO|1|A1|A|2368
8BPO|1|A1|U|2369
8BPO|1|A1|A|2370
8BPO|1|A1|U|2371
*
8BPO|1|A1|A|2389
8BPO|1|A1|G|2390
8BPO|1|A1|G|2391
*
8BPO|1|A1|C|2824
8BPO|1|A1|A|2825
8BPO|1|A1|U|2826
8BPO|1|A1|G|2827
8BPO|1|A1|U|2828
8BPO|1|A1|U|2829
*
8BPO|1|A1|A|3856
8BPO|1|A1|G|3857
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Nascent polypeptide-associated complex subunit alpha N-terminal region
- Chain O2
- 60S ribosomal protein L17
- Chain Q2
- 60S ribosomal protein L19
- Chain c2
- 60S ribosomal protein L31
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