J4_8BPO_004
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8BPO|1|A1|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BPO_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0762
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|G|2406
8BPO|1|A1|G|2407
8BPO|1|A1|U|2408
8BPO|1|A1|U|2409
8BPO|1|A1|C|2410
*
8BPO|1|A1|G|2434
8BPO|1|A1|G|2435
8BPO|1|A1|U|2436
8BPO|1|A1|C|2437
8BPO|1|A1|A|2438
8BPO|1|A1|G|2439
*
8BPO|1|A1|U|2538
8BPO|1|A1|C|2539
*
8BPO|1|A1|G|2777
8BPO|1|A1|G|2778
8BPO|1|A1|C|2779
8BPO|1|A1|C|2780
8BPO|1|A1|G|2781
8BPO|1|A1|U|2782
8BPO|1|A1|A|2783
8BPO|1|A1|C|2784
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q2
- 60S ribosomal protein L19
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain f2
- 60S ribosomal protein L34
- Chain g2
- 60S ribosomal protein L35
- Chain i2
- Ribosomal protein L37
- Chain j2
- 60S ribosomal protein L38
- Chain k2
- 60S ribosomal protein L39-like
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