J4_8BPO_010

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

8BPO|1|A1|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|G|4587
8BPO|1|A1|U|4588
8BPO|1|A1|A|4589
8BPO|1|A1|A|4590
*
8BPO|1|A1|U|4620
8BPO|1|A1|C|4621
*
8BPO|1|A1|G|4676
8BPO|1|A1|U|4677
8BPO|1|A1|G|4678
*
8BPO|1|A1|C|4712
8BPO|1|A1|G|4713
8BPO|1|A1|C|4714
8BPO|1|A1|C|4715

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain N2

60S ribosomal protein L13a

Chain U2

60S ribosomal protein L23