J4_8BQD_009

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8BQD|1|BQ|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BQD_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.095

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|BQ|C|2192
8BQD|1|BQ|U|2193
8BQD|1|BQ|G|2194
*
8BQD|1|BQ|C|2248
8BQD|1|BQ|G|2249
*
8BQD|1|BQ|C|2267
8BQD|1|BQ|U|2268
8BQD|1|BQ|U|2269
8BQD|1|BQ|A|2270
8BQD|1|BQ|A|2271
8BQD|1|BQ|G|2272
8BQD|1|BQ|G|2273
8BQD|1|BQ|U|2274
8BQD|1|BQ|A|2275
8BQD|1|BQ|G|2276
*
8BQD|1|BQ|U|2310
8BQD|1|BQ|G|2311
8BQD|1|BQ|A|2312
8BQD|1|BQ|A|2313
8BQD|1|BQ|U|2314
8BQD|1|BQ|G|2315

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41

Chain AW

60S ribosomal protein L2-A