3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BQX_008 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.072
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_07509.2
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
3

Unit IDs

8BQX|1|BQ|G|2130
8BQX|1|BQ|A|2131
8BQX|1|BQ|C|2132
8BQX|1|BQ|U|2133
8BQX|1|BQ|G|2134
*
8BQX|1|BQ|C|2146
8BQX|1|BQ|A|2147
8BQX|1|BQ|U|2148
8BQX|1|BQ|A|2149
8BQX|1|BQ|G|2150
*
8BQX|1|BQ|U|2186
8BQX|1|BQ|G|2187
8BQX|1|BQ|A|2188
8BQX|1|BQ|U|2189
8BQX|1|BQ|U|2190
*
8BQX|1|BQ|A|2317
8BQX|1|BQ|U|2318
8BQX|1|BQ|U|2319
8BQX|1|BQ|A|2320
8BQX|1|BQ|A|2321
8BQX|1|BQ|C|2322

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain AS
60S ribosomal protein L41-A
Chain AT
60S ribosomal protein L43-A
Chain AW
60S ribosomal protein L2-A

Coloring options:


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