J4_8BR8_001

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CC*GAGUAG*CGAAG*CAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|C|110
8BR8|1|Lt|C|111
*
8BR8|1|Lt|G|221
8BR8|1|Lt|A|222
8BR8|1|Lt|G|223
8BR8|1|Lt|U|224
8BR8|1|Lt|A|225
8BR8|1|Lt|G|226
*
8BR8|1|Lt|C|247
8BR8|1|Lt|G|248
8BR8|1|Lt|A|249
8BR8|1|Lt|A|250
8BR8|1|Lt|G|251
*
8BR8|1|Lt|C|268
8BR8|1|Lt|A|269
8BR8|1|Lt|A|270
8BR8|1|Lt|G|271

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

60S ribosomal protein L13

Chain LO

Ribosomal protein L15

Chain Li

Ribosomal protein L29

Chain Lj

Ribosomal protein L36-1