J4_8BR8_007

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8BR8|1|Lt|U|1802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BR8_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1106

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|C|1680
8BR8|1|Lt|U|1681
8BR8|1|Lt|G|1682
*
8BR8|1|Lt|C|1736
8BR8|1|Lt|G|1737
*
8BR8|1|Lt|C|1755
8BR8|1|Lt|U|1756
8BR8|1|Lt|U|1757
8BR8|1|Lt|A|1758
8BR8|1|Lt|A|1759
8BR8|1|Lt|G|1760
8BR8|1|Lt|G|1761
8BR8|1|Lt|U|1762
8BR8|1|Lt|A|1763
8BR8|1|Lt|G|1764
*
8BR8|1|Lt|U|1798
8BR8|1|Lt|G|1799
8BR8|1|Lt|A|1800
8BR8|1|Lt|A|1801
8BR8|1|Lt|U|1802
8BR8|1|Lt|G|1803

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lo

60S ribosomal protein L41

Chain St

Small subunit ribosomal RNA; SSU rRNA