J4_8BR8_009

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCAC*GC*GGG*CGCC

Length

13 nucleotides

Bulged bases

8BR8|1|Lt|A|2429, 8BR8|1|Lt|G|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|G|2427
8BR8|1|Lt|C|2428
8BR8|1|Lt|A|2429
8BR8|1|Lt|C|2430
*
8BR8|1|Lt|G|2460
8BR8|1|Lt|C|2461
*
8BR8|1|Lt|G|2514
8BR8|1|Lt|G|2515
8BR8|1|Lt|G|2516
*
8BR8|1|Lt|C|2550
8BR8|1|Lt|G|2551
8BR8|1|Lt|C|2552
8BR8|1|Lt|C|2553

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LP

Ribosomal protein L13a

Chain LW

Ribosomal protein L23