J4_8BR8_013
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UGGCCCCCC*GCAG*CAGCCCCGAGGA*UGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8BR8|1|St|C|518, 8BR8|1|St|A|610, 8BR8|1|St|C|612, 8BR8|1|St|C|613, 8BR8|1|St|G|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|St|U|513
8BR8|1|St|G|514
8BR8|1|St|G|515
8BR8|1|St|C|516
8BR8|1|St|C|517
8BR8|1|St|C|518
8BR8|1|St|C|519
8BR8|1|St|C|520
8BR8|1|St|C|521
*
8BR8|1|St|G|583
8BR8|1|St|C|584
8BR8|1|St|A|585
8BR8|1|St|G|586
*
8BR8|1|St|C|609
8BR8|1|St|A|610
8BR8|1|St|G|611
8BR8|1|St|C|612
8BR8|1|St|C|613
8BR8|1|St|C|614
8BR8|1|St|C|615
8BR8|1|St|G|616
8BR8|1|St|A|617
8BR8|1|St|G|618
8BR8|1|St|G|619
8BR8|1|St|A|620
*
8BR8|1|St|U|716
8BR8|1|St|G|717
8BR8|1|St|U|718
8BR8|1|St|C|719
8BR8|1|St|A|720
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SJ
- Ribosomal protein S15A
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
- Chain SP
- Ribosomal protein S13
- Chain Se
- Ribosomal protein S27
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