J4_8BRM_006
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GACUG*CACAG*UGAUU*ACCAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BRM_006 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1918
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BRM|1|Lt|G|1619
8BRM|1|Lt|A|1620
8BRM|1|Lt|C|1621
8BRM|1|Lt|U|1622
8BRM|1|Lt|G|1623
*
8BRM|1|Lt|C|1635
8BRM|1|Lt|A|1636
8BRM|1|Lt|C|1637
8BRM|1|Lt|A|1638
8BRM|1|Lt|G|1639
*
8BRM|1|Lt|U|1674
8BRM|1|Lt|G|1675
8BRM|1|Lt|A|1676
8BRM|1|Lt|U|1677
8BRM|1|Lt|U|1678
*
8BRM|1|Lt|A|1805
8BRM|1|Lt|C|1806
8BRM|1|Lt|C|1807
8BRM|1|Lt|A|1808
8BRM|1|Lt|A|1809
8BRM|1|Lt|C|1810
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain Lo
- Ribosomal protein L41
- Chain Lq
- Ribosomal protein L37a
- Chain St
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: