J4_8BTK_002
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8BTK|1|A2|A|673, 8BTK|1|A2|A|1084, 8BTK|1|A2|C|1086, 8BTK|1|A2|A|1088
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BTK_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1142
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|A|672
8BTK|1|A2|A|673
8BTK|1|A2|G|674
*
8BTK|1|A2|C|1033
8BTK|1|A2|G|1034
8BTK|1|A2|A|1035
8BTK|1|A2|A|1036
8BTK|1|A2|A|1037
8BTK|1|A2|G|1038
*
8BTK|1|A2|C|1079
8BTK|1|A2|C|1080
8BTK|1|A2|A|1081
8BTK|1|A2|PSU|1082
8BTK|1|A2|A|1083
8BTK|1|A2|A|1084
8BTK|1|A2|A|1085
8BTK|1|A2|C|1086
8BTK|1|A2|G|1087
8BTK|1|A2|A|1088
8BTK|1|A2|U|1089
8BTK|1|A2|G|1090
*
8BTK|1|A2|U|1161
8BTK|1|A2|U|1162
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- eS26
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain An
- 40S ribosomal protein S14
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bp
- eL43
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