J4_8BTK_008

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8BTK|1|B5|A|2209, 8BTK|1|B5|U|2212, 8BTK|1|B5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|OMC|2208
8BTK|1|B5|A|2209
8BTK|1|B5|A|2210
8BTK|1|B5|A|2211
8BTK|1|B5|U|2212
8BTK|1|B5|A|2213
8BTK|1|B5|U|2214
*
8BTK|1|B5|A|2232
8BTK|1|B5|G|2233
8BTK|1|B5|G|2234
*
8BTK|1|B5|OMC|2667
8BTK|1|B5|A|2668
8BTK|1|B5|U|2669
8BTK|1|B5|G|2670
8BTK|1|B5|U|2671
8BTK|1|B5|U|2672
*
8BTK|1|B5|A|3588
8BTK|1|B5|G|3589

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BR

60S ribosomal protein L19

Chain Bd

Ribosomal protein L31