J4_8BTK_009
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8BTK|1|B5|C|2280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BTK_009 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1326
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BTK|1|B5|G|2249
8BTK|1|B5|G|2250
8BTK|1|B5|U|2251
8BTK|1|B5|U|2252
8BTK|1|B5|C|2253
*
8BTK|1|B5|G|2277
8BTK|1|B5|G|2278
8BTK|1|B5|U|2279
8BTK|1|B5|C|2280
8BTK|1|B5|A|2281
8BTK|1|B5|G|2282
*
8BTK|1|B5|U|2381
8BTK|1|B5|C|2382
*
8BTK|1|B5|G|2620
8BTK|1|B5|G|2621
8BTK|1|B5|C|2622
8BTK|1|B5|C|2623
8BTK|1|B5|G|2624
8BTK|1|B5|U|2625
8BTK|1|B5|A|2626
8BTK|1|B5|C|2627
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- 60S ribosomal protein L19
- Chain BX
- Ribosomal_L23eN domain-containing protein
- Chain Bg
- 60S ribosomal protein L34
- Chain Bj
- Ribosomal protein L37
- Chain Bk
- eL38
- Chain Bl
- eL39
- Chain SX
- Protein transport protein Sec61 subunit alpha isoform 1
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