J4_8BTK_016

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8BTK|1|B5|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|G|4333
8BTK|1|B5|U|4334
8BTK|1|B5|A|4335
8BTK|1|B5|A2M|4336
*
8BTK|1|B5|OMU|4366
8BTK|1|B5|C|4367
*
8BTK|1|B5|G|4422
8BTK|1|B5|U|4423
8BTK|1|B5|G|4424
*
8BTK|1|B5|C|4458
8BTK|1|B5|G|4459
8BTK|1|B5|C|4460
8BTK|1|B5|C|4461

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

60S ribosomal protein L13a

Chain BV

Ribosomal protein L23