J4_8BUU_011
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BUU_011 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.1801
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BUU|1|A|G|2672
8BUU|1|A|A|2673
8BUU|1|A|G|2674
8BUU|1|A|C|2675
*
8BUU|1|A|G|2703
8BUU|1|A|A|2704
8BUU|1|A|C|2705
*
8BUU|1|A|G|2760
8BUU|1|A|G|2761
8BUU|1|A|A|2762
8BUU|1|A|C|2763
8BUU|1|A|G|2764
*
8BUU|1|A|C|2798
8BUU|1|A|C|2799
8BUU|1|A|C|2800
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
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