J4_8C3A_011

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C3A_011 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.0711

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C3A|1|AS|C|184
8C3A|1|AS|U|185
8C3A|1|AS|A|186
8C3A|1|AS|U|187
8C3A|1|AS|G|188
*
8C3A|1|AS|C|204
8C3A|1|AS|G|205
8C3A|1|AS|U|206
8C3A|1|AS|C|207
*
8C3A|1|AS|G|211
8C3A|1|AS|A|212
8C3A|1|AS|G|213
*
8C3A|1|AS|C|225
8C3A|1|AS|G|226
8C3A|1|AS|U|227
8C3A|1|AS|G|228
8C3A|1|AS|C|229
8C3A|1|AS|G|230

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24