J4_8C8X_001

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C8X|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C8X_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2175

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C8X|1|A|C|268
8C8X|1|A|C|269
*
8C8X|1|A|G|370
8C8X|1|A|A|371
8C8X|1|A|G|372
8C8X|1|A|U|373
8C8X|1|A|A|374
8C8X|1|A|G|375
*
8C8X|1|A|U|399
8C8X|1|A|G|400
8C8X|1|A|A|401
8C8X|1|A|A|402
8C8X|1|A|U|403
8C8X|1|A|A|404
8C8X|1|A|U|405
8C8X|1|A|G|406
*
8C8X|1|A|C|421
8C8X|1|A|A|422
8C8X|1|A|A|423
8C8X|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28