J4_8C90_006

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8C90|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C90_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1088

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C90|1|A|U|1313
8C90|1|A|C|1314
*
8C90|1|A|G|1338
8C90|1|A|G|1339
8C90|1|A|U|1340
8C90|1|A|G|1341
8C90|1|A|A|1342
8C90|1|A|G|1343
*
8C90|1|A|C|1404
8C90|1|A|U|1405
*
8C90|1|A|A|1597
8C90|1|A|A|1598
8C90|1|A|U|1599
8C90|1|A|C|1600
8C90|1|A|G|1601
8C90|1|A|U|1602
8C90|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23