J4_8C92_009

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C92|1|A|U|405, 8C92|1|A|A|422, 8C92|1|A|A|423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C92_009 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4051

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C92|1|A|C|268
8C92|1|A|C|269
*
8C92|1|A|G|370
8C92|1|A|A|371
8C92|1|A|G|372
8C92|1|A|U|373
8C92|1|A|A|374
8C92|1|A|G|375
*
8C92|1|A|U|399
8C92|1|A|G|400
8C92|1|A|A|401
8C92|1|A|A|402
8C92|1|A|U|403
8C92|1|A|A|404
8C92|1|A|U|405
8C92|1|A|G|406
*
8C92|1|A|C|421
8C92|1|A|A|422
8C92|1|A|A|423
8C92|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains