J4_8C93_003

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CAAG*CGAAGGG*CCGAG*CGUUAAG

Length

23 nucleotides

Bulged bases

8C93|1|A|A|627, 8C93|1|A|U|653, 8C93|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C93|1|A|C|601
8C93|1|A|A|602
8C93|1|A|A|603
8C93|1|A|G|604
*
8C93|1|A|C|624
8C93|1|A|G|625
8C93|1|A|A|626
8C93|1|A|A|627
8C93|1|A|G|628
8C93|1|A|G|629
8C93|1|A|G|630
*
8C93|1|A|C|634
8C93|1|A|C|635
8C93|1|A|G|636
8C93|1|A|A|637
8C93|1|A|G|638
*
8C93|1|A|C|650
8C93|1|A|G|651
8C93|1|A|U|652
8C93|1|A|U|653
8C93|1|A|A|654
8C93|1|A|A|655
8C93|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15