J4_8C99_001

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8C99|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C99_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2883

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8C99|1|A|C|268
8C99|1|A|C|269
*
8C99|1|A|G|370
8C99|1|A|A|371
8C99|1|A|G|372
8C99|1|A|U|373
8C99|1|A|A|374
8C99|1|A|G|375
*
8C99|1|A|U|399
8C99|1|A|G|400
8C99|1|A|A|401
8C99|1|A|A|402
8C99|1|A|U|403
8C99|1|A|A|404
8C99|1|A|U|405
8C99|1|A|G|406
*
8C99|1|A|C|421
8C99|1|A|A|422
8C99|1|A|A|423
8C99|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains