J4_8C9B_002

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CAG*CGAUGAGUAG*UGAAUAUG*CCAAG

Length

26 nucleotides

Bulged bases

8C9B|1|A|A|371, 8C9B|1|A|A|404, 8C9B|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C9B|1|A|C|269
8C9B|1|A|A|270
8C9B|1|A|G|271
*
8C9B|1|A|C|366
8C9B|1|A|G|367
8C9B|1|A|A|368
8C9B|1|A|U|369
8C9B|1|A|G|370
8C9B|1|A|A|371
8C9B|1|A|G|372
8C9B|1|A|U|373
8C9B|1|A|A|374
8C9B|1|A|G|375
*
8C9B|1|A|U|399
8C9B|1|A|G|400
8C9B|1|A|A|401
8C9B|1|A|A|402
8C9B|1|A|U|403
8C9B|1|A|A|404
8C9B|1|A|U|405
8C9B|1|A|G|406
*
8C9B|1|A|C|420
8C9B|1|A|C|421
8C9B|1|A|A|422
8C9B|1|A|A|423
8C9B|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains