J4_8C9C_001

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GCCC*GAGUAG*UGAAUAUG*CAAGGC

Length

24 nucleotides

Bulged bases

8C9C|1|A|U|405, 8C9C|1|A|A|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C9C|1|A|G|266
8C9C|1|A|C|267
8C9C|1|A|C|268
8C9C|1|A|C|269
*
8C9C|1|A|G|370
8C9C|1|A|A|371
8C9C|1|A|G|372
8C9C|1|A|U|373
8C9C|1|A|A|374
8C9C|1|A|G|375
*
8C9C|1|A|U|399
8C9C|1|A|G|400
8C9C|1|A|A|401
8C9C|1|A|A|402
8C9C|1|A|U|403
8C9C|1|A|A|404
8C9C|1|A|U|405
8C9C|1|A|G|406
*
8C9C|1|A|C|421
8C9C|1|A|A|422
8C9C|1|A|A|423
8C9C|1|A|G|424
8C9C|1|A|G|425
8C9C|1|A|C|426

Current chains

Chain A

23S rRNA

Nearby chains