J4_8CAH_002
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8CAH|1|2|A|623, 8CAH|1|2|A|1026, 8CAH|1|2|C|1028, 8CAH|1|2|U|1029, 8CAH|1|2|A|1030, 8CAH|1|2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CAH_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0598
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CAH|1|2|A|622
8CAH|1|2|A|623
8CAH|1|2|G|624
*
8CAH|1|2|C|975
8CAH|1|2|G|976
8CAH|1|2|A|977
8CAH|1|2|A|978
8CAH|1|2|A|979
8CAH|1|2|G|980
*
8CAH|1|2|C|1021
8CAH|1|2|C|1022
8CAH|1|2|A|1023
8CAH|1|2|U|1024
8CAH|1|2|A|1025
8CAH|1|2|A|1026
8CAH|1|2|A|1027
8CAH|1|2|C|1028
8CAH|1|2|U|1029
8CAH|1|2|A|1030
8CAH|1|2|U|1031
8CAH|1|2|G|1032
*
8CAH|1|2|U|1103
8CAH|1|2|U|1104
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain Z
- 40S ribosomal protein S14-A
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S26-A
- Chain n
- 60S ribosomal protein L41-A
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
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