J4_8CAI_002

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8CAI|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CAI_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0886

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CAI|1|A|G|142
8CAI|1|A|A|143
8CAI|1|A|G|144
*
8CAI|1|A|C|178
8CAI|1|A|A|179
8CAI|1|A|U|180
8CAI|1|A|A|181
8CAI|1|A|A|182
8CAI|1|A|C|183
8CAI|1|A|G|184
*
8CAI|1|A|C|193
8CAI|1|A|C|194
8CAI|1|A|A|195
8CAI|1|A|A|196
8CAI|1|A|A|197
8CAI|1|A|G|198
*
8CAI|1|A|U|219
8CAI|1|A|G|220
8CAI|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20