J4_8CAM_002

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CAM_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0532

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8CAM|1|a|G|297
8CAM|1|a|G|298
8CAM|1|a|A|299
8CAM|1|a|A|300
8CAM|1|a|G|301
*
8CAM|1|a|C|316
8CAM|1|a|G|317
8CAM|1|a|C|318
8CAM|1|a|G|319
*
8CAM|1|a|C|323
8CAM|1|a|A|324
8CAM|1|a|G|325
*
8CAM|1|a|C|337
8CAM|1|a|G|338
8CAM|1|a|U|339
8CAM|1|a|A|340
8CAM|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24