J4_8CCS_015
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8CCS|1|c|A|623, 8CCS|1|c|A|1026, 8CCS|1|c|C|1028, 8CCS|1|c|U|1029, 8CCS|1|c|A|1030, 8CCS|1|c|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CCS_015 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0652
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CCS|1|c|A|622
8CCS|1|c|A|623
8CCS|1|c|G|624
*
8CCS|1|c|C|975
8CCS|1|c|G|976
8CCS|1|c|A|977
8CCS|1|c|A|978
8CCS|1|c|A|979
8CCS|1|c|G|980
*
8CCS|1|c|C|1021
8CCS|1|c|C|1022
8CCS|1|c|A|1023
8CCS|1|c|U|1024
8CCS|1|c|A|1025
8CCS|1|c|A|1026
8CCS|1|c|A|1027
8CCS|1|c|C|1028
8CCS|1|c|U|1029
8CCS|1|c|A|1030
8CCS|1|c|U|1031
8CCS|1|c|G|1032
*
8CCS|1|c|U|1103
8CCS|1|c|U|1104
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 60S ribosomal protein L41-A
- Chain o
- 40S ribosomal protein S11-A
- Chain p
- 40S ribosomal protein S13
- Chain q
- 40S ribosomal protein S14-A
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
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