J4_8CDR_001
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8CDR|1|AA|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CDR_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0896
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8CDR|1|AA|U|112
8CDR|1|AA|C|113
*
8CDR|1|AA|G|267
8CDR|1|AA|A|268
8CDR|1|AA|G|269
8CDR|1|AA|U|270
8CDR|1|AA|C|271
8CDR|1|AA|G|272
*
8CDR|1|AA|C|293
8CDR|1|AA|U|294
8CDR|1|AA|A|295
8CDR|1|AA|A|296
8CDR|1|AA|G|297
8CDR|1|AA|U|298
8CDR|1|AA|G|299
*
8CDR|1|AA|U|316
8CDR|1|AA|A|317
8CDR|1|AA|A|318
8CDR|1|AA|A|319
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
Coloring options: