J4_8CEU_001

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8CEU|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CEU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1286

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8CEU|1|a|C|268
8CEU|1|a|C|269
*
8CEU|1|a|G|370
8CEU|1|a|A|371
8CEU|1|a|G|372
8CEU|1|a|U|373
8CEU|1|a|A|374
8CEU|1|a|G|375
*
8CEU|1|a|U|399
8CEU|1|a|G|400
8CEU|1|a|A|401
8CEU|1|a|A|402
8CEU|1|a|U|403
8CEU|1|a|A|404
8CEU|1|a|U|405
8CEU|1|a|G|406
*
8CEU|1|a|C|421
8CEU|1|a|A|422
8CEU|1|a|A|423
8CEU|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28