3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
8CEU|1|a|G|1271, 8CEU|1|a|A|1272, 8CEU|1|a|U|1273, 8CEU|1|a|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8CEU_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.0492
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

8CEU|1|a|C|1270
8CEU|1|a|G|1271
8CEU|1|a|A|1272
8CEU|1|a|U|1273
8CEU|1|a|A|1274
8CEU|1|a|A|1275
8CEU|1|a|A|1276
*
8CEU|1|a|U|1294
8CEU|1|a|C|1295
*
8CEU|1|a|G|1645
8CEU|1|a|C|1646
8CEU|1|a|U|1647
8CEU|1|a|U|1648
*
8CEU|1|a|A|2009
8CEU|1|a|G|2010

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
Large ribosomal subunit protein bL17
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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