J4_8CEU_006

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8CEU|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CEU_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0478

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CEU|1|a|U|1313
8CEU|1|a|C|1314
*
8CEU|1|a|G|1338
8CEU|1|a|G|1339
8CEU|1|a|U|1340
8CEU|1|a|G|1341
8CEU|1|a|A|1342
8CEU|1|a|G|1343
*
8CEU|1|a|C|1404
8CEU|1|a|U|1405
*
8CEU|1|a|A|1597
8CEU|1|a|A|1598
8CEU|1|a|U|1599
8CEU|1|a|C|1600
8CEU|1|a|G|1601
8CEU|1|a|U|1602
8CEU|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23