J4_8CF5_006
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CF5_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0502
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|AA|G|2130
8CF5|1|AA|A|2131
8CF5|1|AA|C|2132
8CF5|1|AA|U|2133
8CF5|1|AA|G|2134
*
8CF5|1|AA|C|2146
8CF5|1|AA|A|2147
8CF5|1|AA|U|2148
8CF5|1|AA|A|2149
8CF5|1|AA|G|2150
*
8CF5|1|AA|U|2186
8CF5|1|AA|G|2187
8CF5|1|AA|A|2188
8CF5|1|AA|U|2189
8CF5|1|AA|U|2190
*
8CF5|1|AA|A|2317
8CF5|1|AA|U|2318
8CF5|1|AA|U|2319
8CF5|1|AA|A|2320
8CF5|1|AA|A|2321
8CF5|1|AA|C|2322
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain EE
- 60S ribosomal protein L2-A
- Chain Z
- 60S ribosomal protein L41
- Chain b
- 60S ribosomal protein L43-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: