J4_8CF5_014
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8CF5|1|c|A|623, 8CF5|1|c|A|1026, 8CF5|1|c|C|1028, 8CF5|1|c|U|1029, 8CF5|1|c|A|1030, 8CF5|1|c|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CF5_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0663
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CF5|1|c|A|622
8CF5|1|c|A|623
8CF5|1|c|G|624
*
8CF5|1|c|C|975
8CF5|1|c|G|976
8CF5|1|c|A|977
8CF5|1|c|A|978
8CF5|1|c|A|979
8CF5|1|c|G|980
*
8CF5|1|c|C|1021
8CF5|1|c|C|1022
8CF5|1|c|A|1023
8CF5|1|c|U|1024
8CF5|1|c|A|1025
8CF5|1|c|A|1026
8CF5|1|c|A|1027
8CF5|1|c|C|1028
8CF5|1|c|U|1029
8CF5|1|c|A|1030
8CF5|1|c|U|1031
8CF5|1|c|G|1032
*
8CF5|1|c|U|1103
8CF5|1|c|U|1104
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 60S ribosomal protein L41
- Chain b
- 60S ribosomal protein L43-A
- Chain o
- 40S ribosomal protein S11-A
- Chain p
- 40S ribosomal protein S13
- Chain q
- 40S ribosomal protein S14-A
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
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