J4_8CG8_002

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CG8_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1136

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8CG8|1|AA|C|185
8CG8|1|AA|U|186
8CG8|1|AA|A|187
8CG8|1|AA|U|188
8CG8|1|AA|G|189
*
8CG8|1|AA|C|205
8CG8|1|AA|G|206
8CG8|1|AA|U|207
8CG8|1|AA|C|208
*
8CG8|1|AA|G|212
8CG8|1|AA|A|213
8CG8|1|AA|G|214
*
8CG8|1|AA|C|226
8CG8|1|AA|G|227
8CG8|1|AA|U|228
8CG8|1|AA|G|229
8CG8|1|AA|U|230
8CG8|1|AA|G|231

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A