J4_8CGD_004
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8CGD|1|a|G|1271, 8CGD|1|a|A|1272, 8CGD|1|a|U|1273, 8CGD|1|a|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CGD_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0563
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CGD|1|a|C|1270
8CGD|1|a|G|1271
8CGD|1|a|A|1272
8CGD|1|a|U|1273
8CGD|1|a|A|1274
8CGD|1|a|A|1275
8CGD|1|a|A|1276
*
8CGD|1|a|U|1294
8CGD|1|a|C|1295
*
8CGD|1|a|G|1645
8CGD|1|a|C|1646
8CGD|1|a|U|1647
8CGD|1|a|U|1648
*
8CGD|1|a|A|2009
8CGD|1|a|G|2010
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: