3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8CGJ|1|A|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8CGJ_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.1488
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8CGJ|1|A|G|115
8CGJ|1|A|A|116
8CGJ|1|A|G|117
8CGJ|1|A|U|118
8CGJ|1|A|A|119
8CGJ|1|A|A|120
8CGJ|1|A|U|121
8CGJ|1|A|G|122
*
8CGJ|1|A|U|239
8CGJ|1|A|G|240
*
8CGJ|1|A|C|286
8CGJ|1|A|U|287
8CGJ|1|A|A|288
8CGJ|1|A|G|289
*
8CGJ|1|A|C|311
8CGJ|1|A|C|312

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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