J4_8CGJ_002

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8CGJ|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGJ_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0806

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CGJ|1|A|G|142
8CGJ|1|A|A|143
8CGJ|1|A|G|144
*
8CGJ|1|A|C|178
8CGJ|1|A|A|179
8CGJ|1|A|U|180
8CGJ|1|A|A|181
8CGJ|1|A|A|182
8CGJ|1|A|C|183
8CGJ|1|A|G|184
*
8CGJ|1|A|C|193
8CGJ|1|A|C|194
8CGJ|1|A|A|195
8CGJ|1|A|A|196
8CGJ|1|A|A|197
8CGJ|1|A|G|198
*
8CGJ|1|A|U|219
8CGJ|1|A|G|220
8CGJ|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20