J4_8CGK_001

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8CGK|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGK_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.123

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|C|268
8CGK|1|a|C|269
*
8CGK|1|a|G|370
8CGK|1|a|A|371
8CGK|1|a|G|372
8CGK|1|a|U|373
8CGK|1|a|A|374
8CGK|1|a|G|375
*
8CGK|1|a|U|399
8CGK|1|a|G|400
8CGK|1|a|A|401
8CGK|1|a|A|402
8CGK|1|a|U|403
8CGK|1|a|A|404
8CGK|1|a|U|405
8CGK|1|a|G|406
*
8CGK|1|a|C|421
8CGK|1|a|A|422
8CGK|1|a|A|423
8CGK|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28