J4_8CGN_010
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8CGN|1|Bb|U|8, 8CGN|1|Bb|U|48, 8CGN|1|Bb|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CGN_010 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.228
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8CGN|1|Bb|G|7
8CGN|1|Bb|U|8
8CGN|1|Bb|G|9
8CGN|1|Bb|G|10
*
8CGN|1|Bb|C|26
8CGN|1|Bb|G|27
8CGN|1|Bb|U|28
*
8CGN|1|Bb|A|44
8CGN|1|Bb|A|45
8CGN|1|Bb|G|46
8CGN|1|Bb|G|47
8CGN|1|Bb|U|48
8CGN|1|Bb|C|49
8CGN|1|Bb|G|50
*
8CGN|1|Bb|C|66
8CGN|1|Bb|C|67
Current chains
- Chain Bb
- Transfer RNA fMet
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain MM
- 60S ribosomal protein L10
- Chain NN
- 60S ribosomal protein L11-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- 40S ribosomal protein S18-A
Coloring options: