3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
8CGR|1|A|C|183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8CGR_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.0806
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8CGR|1|A|G|142
8CGR|1|A|A|143
8CGR|1|A|G|144
*
8CGR|1|A|C|178
8CGR|1|A|A|179
8CGR|1|A|U|180
8CGR|1|A|A|181
8CGR|1|A|A|182
8CGR|1|A|C|183
8CGR|1|A|G|184
*
8CGR|1|A|C|193
8CGR|1|A|C|194
8CGR|1|A|A|195
8CGR|1|A|A|196
8CGR|1|A|A|197
8CGR|1|A|G|198
*
8CGR|1|A|U|219
8CGR|1|A|G|220
8CGR|1|A|C|221

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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