J4_8CGV_001

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8CGV|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CGV_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1353

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|C|268
8CGV|1|a|C|269
*
8CGV|1|a|G|370
8CGV|1|a|A|371
8CGV|1|a|G|372
8CGV|1|a|U|373
8CGV|1|a|A|374
8CGV|1|a|G|375
*
8CGV|1|a|U|399
8CGV|1|a|G|400
8CGV|1|a|A|401
8CGV|1|a|A|402
8CGV|1|a|U|403
8CGV|1|a|A|404
8CGV|1|a|U|405
8CGV|1|a|G|406
*
8CGV|1|a|C|421
8CGV|1|a|A|422
8CGV|1|a|A|423
8CGV|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28