J4_8CIV_013

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UACAU*AUGCUUAAAA*UG*CGAA

Length

21 nucleotides

Bulged bases

8CIV|1|c|C|139, 8CIV|1|c|A|140, 8CIV|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|U|137
8CIV|1|c|A|138
8CIV|1|c|C|139
8CIV|1|c|A|140
8CIV|1|c|U|141
*
8CIV|1|c|A|173
8CIV|1|c|U|174
8CIV|1|c|G|175
8CIV|1|c|C|176
8CIV|1|c|U|177
8CIV|1|c|U|178
8CIV|1|c|A|179
8CIV|1|c|A|180
8CIV|1|c|A|181
8CIV|1|c|A|182
*
8CIV|1|c|U|203
8CIV|1|c|G|204
*
8CIV|1|c|C|263
8CIV|1|c|G|264
8CIV|1|c|A|265
8CIV|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A