J4_8CKU_010
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UUAG*CGCC*GGAGGUCC*GA
- Length
- 18 nucleotides
- Bulged bases
- 8CKU|1|Bb|U|8, 8CKU|1|Bb|U|47, 8CKU|1|Bb|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CKU_010 not in the Motif Atlas
- Homologous match to J4_7E8O_001
- Geometric discrepancy: 0.4142
- The information below is about J4_7E8O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|Bb|U|7
8CKU|1|Bb|U|8
8CKU|1|Bb|A|9
8CKU|1|Bb|G|10
*
8CKU|1|Bb|C|25
8CKU|1|Bb|G|26
8CKU|1|Bb|C|27
8CKU|1|Bb|C|28
*
8CKU|1|Bb|G|42
8CKU|1|Bb|G|43
8CKU|1|Bb|A|44
8CKU|1|Bb|G|45
8CKU|1|Bb|G|46
8CKU|1|Bb|U|47
8CKU|1|Bb|C|48
8CKU|1|Bb|C|49
*
8CKU|1|Bb|G|65
8CKU|1|Bb|A|66
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- Elongation factor 2
- Chain MM
- 60S ribosomal protein L10
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: