J4_8CKU_013

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UACAU*AUGCUUAAAAUC*GAUG*CGAA

Length

25 nucleotides

Bulged bases

8CKU|1|c|C|139, 8CKU|1|c|A|140, 8CKU|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|U|137
8CKU|1|c|A|138
8CKU|1|c|C|139
8CKU|1|c|A|140
8CKU|1|c|U|141
*
8CKU|1|c|A|173
8CKU|1|c|U|174
8CKU|1|c|G|175
8CKU|1|c|C|176
8CKU|1|c|U|177
8CKU|1|c|U|178
8CKU|1|c|A|179
8CKU|1|c|A|180
8CKU|1|c|A|181
8CKU|1|c|A|182
8CKU|1|c|U|183
8CKU|1|c|C|184
*
8CKU|1|c|G|201
8CKU|1|c|A|202
8CKU|1|c|U|203
8CKU|1|c|G|204
*
8CKU|1|c|C|263
8CKU|1|c|G|264
8CKU|1|c|A|265
8CKU|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A