J4_8CKU_015

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

8CKU|1|Bb|U|8, 8CKU|1|Bb|U|47, 8CKU|1|Bb|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CKU_015 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.3511

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8CKU|1|Bb|U|7
8CKU|1|Bb|U|8
8CKU|1|Bb|A|9
8CKU|1|Bb|G|10
*
8CKU|1|Bb|C|25
8CKU|1|Bb|G|26
8CKU|1|Bb|C|27
*
8CKU|1|Bb|G|43
8CKU|1|Bb|A|44
8CKU|1|Bb|G|45
8CKU|1|Bb|G|46
8CKU|1|Bb|U|47
8CKU|1|Bb|C|48
8CKU|1|Bb|C|49
*
8CKU|1|Bb|G|65
8CKU|1|Bb|A|66

Current chains

Chain Bb

Transfer RNA Phe

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Aa

Elongation factor 2

Chain MM

60S ribosomal protein L10