J4_8CMJ_007

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8CMJ|1|AA|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CMJ_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1758

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|C|2192
8CMJ|1|AA|U|2193
8CMJ|1|AA|G|2194
*
8CMJ|1|AA|C|2248
8CMJ|1|AA|G|2249
*
8CMJ|1|AA|C|2267
8CMJ|1|AA|U|2268
8CMJ|1|AA|U|2269
8CMJ|1|AA|A|2270
8CMJ|1|AA|A|2271
8CMJ|1|AA|G|2272
8CMJ|1|AA|G|2273
8CMJ|1|AA|U|2274
8CMJ|1|AA|A|2275
8CMJ|1|AA|G|2276
*
8CMJ|1|AA|U|2310
8CMJ|1|AA|G|2311
8CMJ|1|AA|A|2312
8CMJ|1|AA|A|2313
8CMJ|1|AA|U|2314
8CMJ|1|AA|G|2315

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain Z

60S ribosomal protein L41

Chain c

Small subunit ribosomal RNA; SSU rRNA